News Now Online: Full Single Cell Subtype Analysis Workflow!

Today we published our first release of the FASTGenomics platform. You can now access our first prototype at https://fastgenomics.org. Choose one of eight recent data sets to explore the functionality. Right now, the prototype offers you a full pipeline for subtype discovery in single cell transcriptomics data.

  • Among others, you will find tools for
  • an interactive data quality assurance screen, including a simple tool for batch effect analysis
  • t-SNE-embedding powered by deep neural networks
  • clustering with HDBSCAN
  • 3D-exploration of t-SNE-embedding for insights into clustering confidence
  • differential gene expression with generalized linear models
  • gene set enrichment analysis using GO
  • comprehensive scientific summary of all methods and results

FASTGenomics is available as a free online tool now. Try it out now!