Single Cell Genomics

Massively parallel sequencing of single cell mRNA data is transforming many fields of biological research. Find out more about recent advancements.

Learn More


FASTGenomics for single cell transcriptomics is a new platform to analyze single cell expression data designed to fit your research routine.

Learn More

Supported By

Publish your own apps!

FASTGenomics App Development on GitHub
With the newly advanced AppStore, everyone can contribute their own app or software package – and easily run them on all data sets on the platform. And since FASTGenomics uses Docker, you can use any programming language.
Check out the GitHub repository to find templates for calculations and visualizations in R and python.

Get in touch if you have any questions or comments, or if you want us to include your app in a FASTGenomics workflow. No programming expertise, but in need of an app? Let us know!

Data, apps, results.

Everything in one place, ready to support your work.
FASTGenomics is designed to serve as a community platform. Explore existing prominent show cases from recent publications, or provide your own data (public or private). Apply predefined workflows from existing apps – or get in touch to create your own pipelines. Download all tables, plots, results and method descriptions from the summary screen. And of course, we’re always here to help!

Single Cell Analytics
A New Perspective To Biology

No background in
biology or analytics?
find out why Single Cell
Genomics is important!

Advances in single-cell sequencing are rewriting our understanding of genomics. A combination of massively parallel sequencing of single cell mRNA data and big data analytics is transforming many fields of biological research. This will revolutionize the way we treat cancer or immunological diseases, and provide breakthroughs in the handling of infectious disease outbreaks, drug-resistant strains or microbial communities in health care or in the environment.


FASTGenomics for single cell transcriptomics: A platform designed to scale with the needs of its community.
Learn more


  • App Store

  • Smart forum

  • Automatic reports

  • Security concept

  • Interfaces to databases

  • Cloud or local solution

  • Incredibly fast

Software that fits your analytic lifecycle

FASTGenomics is an ONGOING PROJECT and GROWING QUICKLY. We’re adding new features all the time. Find out what is currently available and how you can contribute your own content:

  • Sequencing technologies
  • Analyses
  • Algorithms
  • Data Sets

Find out more

About us

FASTGenomics is a research cooperation between Comma Soft and LIMES Institute of Bonn University. The project is funded by the German Federal Ministry of Economic Affairs and Technology. Together, we develop FASTGenomics as an analytic and diagnostic software solution. Use of FASTGenomics is free for academic research. Please get in touch if you want to use the platform for other purposes or if you prefer a private cloud or onsite installation.

Supported by